PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family AP2
Protein Properties Length: 553aa    MW: 60889 Da    PI: 7.3074
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14410.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.3e-15171230155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  PK14410.1 171 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 230
                57*******************666664477446*************************98 PP

2AP247.15.9e-15273324155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PK14410.1 273 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 324
                57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.64E-21171240No hitNo description
SuperFamilySSF541715.75E-17171240IPR016177DNA-binding domain
PfamPF008473.2E-12171230IPR001471AP2/ERF domain
PROSITE profilePS5103218.808172238IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-15172239IPR001471AP2/ERF domain
SMARTSM003801.0E-28172244IPR001471AP2/ERF domain
PRINTSPR003672.4E-6173184IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18273334IPR016177DNA-binding domain
PfamPF008477.3E-10273324IPR001471AP2/ERF domain
CDDcd000182.39E-24273334No hitNo description
PROSITE profilePS5103219.045274332IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18274333IPR001471AP2/ERF domain
SMARTSM003801.5E-33274338IPR001471AP2/ERF domain
PRINTSPR003672.4E-6314334IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MDHSSSSSST PHHDDHHHQN WLAFSLSNHN PLSLFQTSFT TPNNLEDHHH HQDASSTDLA  60
MFTGAAPKLE NFLGGGPTTA SSPNSNNNNQ FNGVDQTAVT EADELYESEL KTIAASFLHG  120
FNSHINNNNN NNIMSIITND SNLSCQLEAP PSAVAPVSSK KTVDTFGQRT SIYRGVTRHR  180
WTGRYEAHLW DNSCRREGQS RKGRQVYLGG YDKEEKAARA YDLAALKYWG PTTTTNFAVS  240
NYEKELEDMT NMTRQEFVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL  300
YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS IANSNLPVGG MSNNTKLSKT  360
SPERAIDNLS SPASSLVAFS SSATNNNNNT TPQQQQQQQQ QISSNLSFTL PIKQDLTTTT  420
TSSTDYWSNI FGFQNPNPSS TTSTTPSLLL GHNSHNLSAT TTNATTTTTT TSNGGYYGNF  480
IESISNNNNN NNNTNLGYGS GLSSWISNSN HNINGGSSNS SNVHNHLHHH HHHHEVVHAK  540
QPSLFQTPIF GME
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007014251.11e-174AP2-like ethylene-responsive transcription factor AIL5, putative
SwissprotQ6PQQ31e-150AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A061GPU41e-174A0A061GPU4_THECC; AP2-like ethylene-responsive transcription factor AIL5, putative
STRINGPOPTR_0006s18330.11e-166(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-136AINTEGUMENTA-like 5