PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14097.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 184aa    MW: 20947.9 Da    PI: 10.3565
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14097.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.6e-17453148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     r+rW +eEd ll  +vkq+G+++W++I+++mg  + R +k+c +rw +yl
        PK14097.1  4 RQRWQPEEDSLLRAYVKQYGPKDWNLISQRMGkpLQRDPKSCLERWKNYL 53
                     89**********************************************97 PP

2Myb_DNA-binding36.98.5e-1259103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+ T+eE+ l + + +++G++ Wk+Ia++++ gRt+k +  +w  +
        PK14097.1  59 KGSLTPEEQSLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103
                      6788******************.*********.*****999999766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.209157IPR017930Myb domain
SMARTSM007175.1E-14355IPR001005SANT/Myb domain
SuperFamilySSF466894.67E-23498IPR009057Homeodomain-like
CDDcd001671.32E-11653No hitNo description
Gene3DG3DSA:1.10.10.601.5E-21660IPR009057Homeodomain-like
PfamPF139212.0E-16769No hitNo description
SMARTSM007177.3E-1058106IPR001005SANT/Myb domain
PROSITE profilePS5129417.93558108IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-1661108IPR009057Homeodomain-like
CDDcd001671.82E-763104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010338Biological Processleaf formation
GO:0042742Biological Processdefense response to bacterium
GO:0045088Biological Processregulation of innate immune response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:0000793Cellular Componentcondensed chromosome
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MKERQRWQPE EDSLLRAYVK QYGPKDWNLI SQRMGKPLQR DPKSCLERWK NYLKPGLKKG  60
SLTPEEQSLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKQ LNKNNKSSSS  120
SSSLLISATN SLQSHHHQLY PEGNIPITGV GSPENAAQGP YDHILETFAE KYVQPKLYAA  180
AATG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A2e-16111169110MYB3
3zqc_D2e-16111169110MYB3
3zqc_G2e-16111169110MYB3
3zqc_J2e-16111169110MYB3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371007.13e-90PREDICTED: protein rough sheath 2 homolog
SwissprotQ94IB12e-62RS2_ORYSJ; Protein rough sheath 2 homolog
SwissprotO809312e-62AS1_ARATH; Transcription factor AS1
TrEMBLA0A0K1SBK81e-90A0A0K1SBK8_REHGL; R2R3-MYB protein
STRINGPOPTR_0017s13950.14e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25973369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.15e-60MYB family protein