PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12901.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 204aa    MW: 23620.8 Da    PI: 4.9479
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12901.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1141.6e-35111391128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrF Ptdeelvv++L++kv+  +++  +vi+++++y ++Pw+L+ k+ +e+++wyf+s++         +nr+t++gyWka g +++v ++ + ++
  PK12901.1  11 LPPGFRFYPTDEELVVHFLHRKVSLLPCHP-DVIPDLELYPYDPWELDGKALGEDNKWYFYSRKT--------QNRVTRNGYWKALGIEESVNNNtTYKK 101
                79*************************999.99**************977778999*****9974........5899***************99867788 PP

        NAM 100 vglkktLvfy.........kgrapkgektdWvmheyrl 128
                vg+kk +vfy         +++++ + kt+W+mhe++l
  PK12901.1 102 VGTKKYFVFYvgdlpnnnnNNSSSPAIKTNWIMHEFHL 139
                **********88888765434555557*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-448174IPR003441NAC domain
PROSITE profilePS5100542.60611175IPR003441NAC domain
PfamPF023654.6E-2412139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
XNNNNDNNVN LPPGFRFYPT DEELVVHFLH RKVSLLPCHP DVIPDLELYP YDPWELDGKA  60
LGEDNKWYFY SRKTQNRVTR NGYWKALGIE ESVNNNTTYK KVGTKKYFVF YVGDLPNNNN  120
NNSSSPAIKT NWIMHEFHLS DSASASTSST RSSSKRRSSN KIDYSKWVLC RVYERDEDDD  180
GTELSCLDEV FLSLDDLDEI SLPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-37717613166NO APICAL MERISTEM PROTEIN
1ut4_B3e-37717613166NO APICAL MERISTEM PROTEIN
1ut7_A3e-37717613166NO APICAL MERISTEM PROTEIN
1ut7_B3e-37717613166NO APICAL MERISTEM PROTEIN
3swm_A3e-37717616169NAC domain-containing protein 19
3swm_B3e-37717616169NAC domain-containing protein 19
3swm_C3e-37717616169NAC domain-containing protein 19
3swm_D3e-37717616169NAC domain-containing protein 19
3swp_A3e-37717616169NAC domain-containing protein 19
3swp_B3e-37717616169NAC domain-containing protein 19
3swp_C3e-37717616169NAC domain-containing protein 19
3swp_D3e-37717616169NAC domain-containing protein 19
4dul_A3e-37717613166NAC domain-containing protein 19
4dul_B3e-37717613166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103879.11e-105NAC domain-containing protein 104 isoform X1
SwissprotQ8GWK65e-85NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A2P5DRY61e-106A0A2P5DRY6_PARAD; NAC domain containing protein
STRINGXP_010103879.11e-104(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-81xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]