PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10122.3
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GATA
Protein Properties Length: 336aa    MW: 36849.6 Da    PI: 5.0333
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10122.3genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.91.4e-18256290135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  PK10122.3 256 CSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRL 290
                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.6E-771330IPR016679Transcription factor, GATA, plant
SuperFamilySSF577166.18E-14249312No hitNo description
SMARTSM004011.1E-15250304IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.886250286IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-14254288IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.25E-14255303No hitNo description
PROSITE patternPS003440256281IPR000679Zinc finger, GATA-type
PfamPF003201.9E-16256290IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MECVEGTFKT SFEENGDDFF VDDLLNFSNE DCFVEEDEPE QEPEEEEDNK GFDSVSPSLL  60
NPNQTEEQDN SIPVTSTSFS TKHQFGPVPN NNTTTELSVP VDELANLEWL SHFVEDSFSE  120
FSTPYLAGTG GVSSENPKNQ TEKIAPEPQM VTIPEKPCFS TPVPAKARSK RTRTGGRVWS  180
MGSPSFTESS SSSTSSSSSS SPSSPWLLYQ TVLSHDPAGS VEKPQAKKPK KKLTQVGHAT  240
NPANPTNPAG QPSRRCSHCG VQKTPQWRTG PLGAKTLCNA CGVRFKSGRL LPEYRPACSP  300
TFSSELHSNH HRKVLEMRRK KEDVPVAESG FVVPSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241780.11e-109PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH575e-75GATA5_ARATH; GATA transcription factor 5
TrEMBLM5WGI31e-109M5WGI3_PRUPE; Uncharacterized protein
STRINGVIT_04s0023g02880.t012e-91(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-72GATA transcription factor 5