PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09091.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 335aa    MW: 37094.6 Da    PI: 8.1731
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09091.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0018426123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C++sF +   L  H++ H
  PK09091.1  4 HRCKLCHRSFANGRALGGHMKAH 26
               79******************998 PP

2zf-C2H212.30.0005240262123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp+C k+F +   L  H r+H
  PK09091.1 240 FECPYCYKVFGSGQALGGHKRSH 262
                89**************9999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.9E-7327IPR007087Zinc finger, C2H2
SuperFamilySSF576676.11E-7326No hitNo description
SMARTSM003550.057426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576676.11E-7196221No hitNo description
SMARTSM0035546201221IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-4201221IPR007087Zinc finger, C2H2
SuperFamilySSF576671.99E-5236264No hitNo description
SMARTSM003550.17240262IPR015880Zinc finger, C2H2-like
PfamPF139128.0E-13240262IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889240267IPR007087Zinc finger, C2H2
PROSITE patternPS000280242262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MERHRCKLCH RSFANGRALG GHMKAHLATL PLPPKNPEPA SSSSSDPDAD DNKSLALAYG  60
LRENPKKSFR LADPEFSFPA ADNGSVVIQD RESETESRNP TRRRSKRNRR PNALKRIPSW  120
VVVDSVPLTE TEPVSSVSDT SPEEDVAMCL MMLSRDVWEQ EEQVIKTVTL KKSMTDDEED  180
EVIVKRLKRV NNNSNNGVAK HKCDMCKKVF RSHQAMCGHK KICSMNENQE KEGVKDNKIF  240
ECPYCYKVFG SGQALGGHKR SHQLNSSSSS ATATTTTATT AKPIIIITST STTTTTTTNT  300
TLTDNSVKHR HHSGLIDLNL PAPLDDDDFS VLSDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197109RNPTRRRSKRNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299433.11e-101PREDICTED: zinc finger protein ZAT4
TrEMBLA0A2P5F5H31e-107A0A2P5F5H3_TREOI; TFIIH C1-like domain containing protein
STRINGXP_004299433.11e-101(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-33C2H2-like zinc finger protein