PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK06940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 550aa    MW: 59672.6 Da    PI: 5.8014
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK06940.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11366408754
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  PK06940.1 366 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 408
                79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16362428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14365414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-9365408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15366421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.95E-13366412No hitNo description
CDDcd048731.13E-7479539No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MLPRSNGAVW IDGDEEDAAS SWTKNNEGVV VEPNNNNKEE EMGLGANSFS SFKTMLETDW  60
YMNNALNPTP SSHHLHGLSL PPPPPNNTTT NHHDISFCNN PVTDHNNNLL LQPIDSSASC  120
SPSQAFNLDP SHSHNFLQAK SCFSSLLNVV NNNPFDNGFD LSCESGFLNN PVLMGFAGLN  180
SQQNQMGGTT PELSSSSDFP GNRLLPLSDD AAALGGGFSP TGFEGFDGSA GSALFLNNRA  240
KVLRPLEVFP PVGAQPTLFQ KRAALRQNSG GADKLGNLDV SASTRFGKSL ESFEKKRKKS  300
IDDGEIEESI DVSGLNYDSD DANEYSKLED NTNKNGGGSN SNANSTVTGG GDQKGKKKGL  360
PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIDYLKELLQ RINDLHNELE  420
STPPGSLLPP SSSFHPLTPT PPTLPCRVKE ELFPGSLPSP KNQPARVEVR LREGRAVNIH  480
MFCARRPGLL LSTMRALDNL GLDIQQAVIS CFNGFALDVF RAEQCREGQE VLPEQIKAVL  540
LDSAGFHGTI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294298KKRKK
2355373KKKGLPAKNLMAERRRRKK
3367374ERRRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007032008.10.0Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
SwissprotQ9LSE21e-169ICE1_ARATH; Transcription factor ICE1
TrEMBLS4WVT00.0S4WVT0_9R
STRINGVIT_14s0068g01200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-146bHLH family protein