PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03977.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family LBD
Protein Properties Length: 208aa    MW: 22923.2 Da    PI: 7.9956
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03977.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.81.9e-292102196
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C ++Cvl+ ++     p++q +++ +++k+FG+s ++++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e++
  PK03977.1   2 SCNGCRVLRKGCGESCVLRSCLhwiesPEAQGNATLFLAKFFGRSDLMSFISAVPDHHRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHVCQAAVETV 101
                6***********************************************************************************************9987 PP

     DUF260  96 l 96 
                l
  PK03977.1 102 L 102
                6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.7011107IPR004883Lateral organ boundaries, LOB
PfamPF031958.2E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSCNGCRVLR KGCGESCVLR SCLHWIESPE AQGNATLFLA KFFGRSDLMS FISAVPDHHR  60
PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCQAAVET VLCGGVLRPM QGVLMQKLEE  120
SSDMLAVAAD TSSWPSSSYH YFPSLPSIYD PRQELYYSGA RGSSGIFPMS TEKLIRRDSI  180
SRSSEESVMT KSFGIRDRKE QKLLNLFV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885030.13e-89PREDICTED: LOB domain-containing protein 39-like
RefseqXP_015900491.13e-89PREDICTED: LOB domain-containing protein 39-like
SwissprotQ9SZE83e-63LBD39_ARATH; LOB domain-containing protein 39
TrEMBLW9SE372e-88W9SE37_9R
STRINGPOPTR_0002s12020.12e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-62LOB domain-containing protein 39