PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03169.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family LBD
Protein Properties Length: 311aa    MW: 33956.1 Da    PI: 7.8483
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03169.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.82.7e-314107199
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C++lr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe++r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q+++e++
  PK03169.1   4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHHRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWHLCQAAVEAV 103
                6*************************************************************************************************99 PP

     DUF260  96 llke 99 
                l ++
  PK03169.1 104 LKGS 107
                8776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381551.7E-961309IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.3523109IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-254102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
HRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWHLCQAAV EAVLKGSPIT PITSEAAVSS  120
HGPPLKAYDI RHVSKDENSA ASNDPTNQQR STKTRCRFKR NVVKPKARKA TEFEVEGTRC  180
DTTQSKWATY CADDQVNRST SHDSSVSHQS DPAPNVDGDS KETETSMVSV ETAEVSLLFR  240
ADTESATKPG NDATRDNEPA LELTLGFEPA SHARRHVVPV KKRRIETTGS DGCTTSDDGA  300
CKIELGLEYP A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103788.11e-166hypothetical protein L484_008640
SwissprotQ9M8861e-103LBD41_ARATH; LOB domain-containing protein 41
TrEMBLW9RUX71e-166W9RUX7_9R
STRINGGLYMA18G53440.11e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.16e-94LOB domain-containing protein 41