PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03075.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family LBD
Protein Properties Length: 241aa    MW: 26061.7 Da    PI: 8.5775
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03075.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.92.1e-302101195
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e+ 
  PK03075.1   2 SCNGCRVLRKGCSESCILRPCLqwietAEAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHMCQAAVETI 101
                6*********************9999777889***************************************************************99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.7971107IPR004883Lateral organ boundaries, LOB
PfamPF031958.3E-262100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIETAE AQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHMCQAAVET ILRGGTLRPL PELLGGGGTG  120
TMTATTPTAA SDEASEAEVT CTDIWKVRDP NSGSRFSTSR SRLSPKRKRS DSPAKLRNTA  180
DLDLRLTPIF PVKPTARKAD VRRPVSPSMN SEESETTTCY DSCLADQSAI GGDRKLLNLF  240
F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010086954.11e-127hypothetical protein L484_005914
SwissprotQ9SN231e-92LBD38_ARATH; LOB domain-containing protein 38
TrEMBLW9QC491e-127W9QC49_9R
STRINGPOPTR_0007s10010.11e-113(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-73LOB domain-containing protein 37