PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK00972.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family LBD
Protein Properties Length: 67aa    MW: 7121.13 Da    PI: 9.0182
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK00972.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26074.91.5e-23767160
     DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamss 60
               +C aCk+lrrkC+++C++apyf  +  +++fa+vhk+FGasnv+kll +lp+++r+da++s
  PK00972.1  7 SCGACKFLRRKCSSECIFAPYFGYDGaASHFAAVHKVFGASNVSKLLLHLPQHNRSDAATS 67
               6*********************998868*****************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.437667IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-22767IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MTGLGSSCGA CKFLRRKCSS ECIFAPYFGY DGAASHFAAV HKVFGASNVS KLLLHLPQHN  60
RSDAATS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007009269.12e-37LOB domain-containing protein 29
SwissprotQ9LHS87e-32LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A061FTN72e-37A0A061FTN7_THECC; LOB domain-containing protein 29
STRINGPOPTR_0010s20800.11e-35(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.14e-33LOB domain-containing protein 33