PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024608m
Common NameCARUB_v10024608mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 203aa    MW: 23302 Da    PI: 9.5508
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024608mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.26e-101251342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i+n+s r +t+ +R  g+ KK +E+ +LC+++++ +i+ +
  Carubv10024608m 12 ISNDSIRRTTLRRRGDGLKKKLSEIKTLCGVDACAVIYDP 51
                     9*********************************999965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.2E-10261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.886249IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-15379IPR002100Transcription factor, MADS-box
CDDcd002664.55E-19380No hitNo description
PfamPF003195.0E-111252IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGKRRKLKLA YISNDSIRRT TLRRRGDGLK KKLSEIKTLC GVDACAVIYD PEKPTPDVWP  60
SEPEVSDVIK RVDTETATKR IMMNQKDFLN QCIEKAKKQE RRMVEDNKEI RLKEAMFKCL  120
EGGKMGDPDM NNKDRRELCE FVNKYLKNLY YHRDVTLKNP DFEIGESSSR HMVPSYVPVM  180
APPPPMAEVS SFPPLHSLGT HT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024608m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640781.11e-138agamous-like MADS-box protein AGL80 isoform X2
TrEMBLR0FZ771e-148R0FZ77_9BRAS; Uncharacterized protein
STRINGXP_006295504.11e-149(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.13e-53AGAMOUS-like 46