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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10024482m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 238aa MW: 27528.2 Da PI: 6.5228 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29.3 | 1.1e-09 | 12 | 51 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+n+s r +t+ +R g+ KK +E+ +LC+++++ +i+ + Carubv10024482m 12 ISNDSIRRTTLRRRGDGLKKKLNEIKTLCGVDACAVIYDP 51 9*********************************999965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.054 | 2 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.0E-10 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.22E-21 | 3 | 80 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-15 | 3 | 79 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.9E-11 | 12 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGKRRKLKLA YISNDSIRRT TLRRRGDGLK KKLNEIKTLC GVDACAVIYD PEKPTPDVWP 60 SEPEVSDVIK RVDTETATKR IMMNQKDFLN QCIEKAKKQE RRMCLEGGKM GDPDMNNKDR 120 RELCEFVDKY LKNLYYHRDV TLKNPDFEIG ESSSRHMVPS YVPVMAPPPP MAETNQGAAD 180 IDLQISNNQE VYIPAVNQDE FQYPNQNHDG TQDQGFIEQM MKYGEETNFP WMDHKQF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10024482m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296573.2 | 1e-164 | agamous-like MADS-box protein AGL80 isoform X1 | ||||
TrEMBL | R0FZN5 | 1e-152 | R0FZN5_9BRAS; Uncharacterized protein | ||||
STRING | XP_006295398.1 | 1e-153 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28700.1 | 5e-45 | AGAMOUS-like 46 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10024482m |