PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024482m
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 238aa    MW: 27528.2 Da    PI: 6.5228
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024482mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.31.1e-091251342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i+n+s r +t+ +R  g+ KK +E+ +LC+++++ +i+ +
  Carubv10024482m 12 ISNDSIRRTTLRRRGDGLKKKLNEIKTLCGVDACAVIYDP 51
                     9*********************************999965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.054249IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-10261IPR002100Transcription factor, MADS-box
CDDcd002669.22E-21380No hitNo description
SuperFamilySSF554551.83E-15379IPR002100Transcription factor, MADS-box
PfamPF003197.9E-111252IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGKRRKLKLA YISNDSIRRT TLRRRGDGLK KKLNEIKTLC GVDACAVIYD PEKPTPDVWP  60
SEPEVSDVIK RVDTETATKR IMMNQKDFLN QCIEKAKKQE RRMCLEGGKM GDPDMNNKDR  120
RELCEFVDKY LKNLYYHRDV TLKNPDFEIG ESSSRHMVPS YVPVMAPPPP MAETNQGAAD  180
IDLQISNNQE VYIPAVNQDE FQYPNQNHDG TQDQGFIEQM MKYGEETNFP WMDHKQF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024482m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296573.21e-164agamous-like MADS-box protein AGL80 isoform X1
TrEMBLR0FZN51e-152R0FZN5_9BRAS; Uncharacterized protein
STRINGXP_006295398.11e-153(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.15e-45AGAMOUS-like 46