PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024311m
Common NameCARUB_v10024311mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family SBP
Protein Properties Length: 131aa    MW: 15321.2 Da    PI: 8.0704
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024311mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1391.3e-4352129178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqve+C+ad+s+ak+yh+rhkvCe+h+kap v +sgl+qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk+++
  Carubv10024311m  52 VCQVESCTADMSKAKQYHKRHKVCEFHAKAPIVRISGLHQRFCQQCSRFHELGEFDEAKRSCRRRLAGHNERRRKTAT 129
                      6**************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375756.9E-571130IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.101.2E-3347114IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.38550127IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.47E-3852128IPR004333Transcription factor, SBP-box
PfamPF031105.2E-3353126IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MSMRRSKAEG KRCLRELSEE EEEEETEDED TFEEEEALEK KQKGKVTSSS RVCQVESCTA  60
DMSKAKQYHK RHKVCEFHAK APIVRISGLH QRFCQQCSRF HELGEFDEAK RSCRRRLAGH  120
NERRRKTATE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-3947126584squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00290DAPTransfer from AT2G33810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0054431e-166BT005443.1 Arabidopsis thaliana clone U50647 putative squamosa-promoter binding protein (At2g33810) mRNA, complete cds.
GenBankAK1181791e-166AK118179.1 Arabidopsis thaliana At2g33810 mRNA for putative squamosa-promoter binding protein, complete cds, clone: RAFL19-50-A02.
GenBankY094271e-166Y09427.1 A.thaliana mRNA for squamosa-promoter binding protein like 3.
GenBankAJ2429591e-166AJ242959.1 Arabidopsis thaliana mRNA for Squamosa promoter binding protein-like 3 (SPL3 gene).
GenBankAJ0116331e-166AJ011633.1 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295226.11e-88hypothetical protein CARUB_v10024311mg
SwissprotP930153e-66SPL3_ARATH; Squamosa promoter-binding-like protein 3
TrEMBLR0HES92e-88R0HES9_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.4__1394__AT2G33810.15e-66(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-60squamosa promoter binding protein-like 3