PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024179m
Common NameCARUB_v10024179mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 172aa    MW: 18501.3 Da    PI: 10.065
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024179mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00154870123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C+ C+k F++   L  H  +H
  Carubv10024179m 48 FACKTCNKEFPSFQALGGHRASH 70
                     78**********99999998887 PP

2zf-C2H2120.0006292114123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+Cg  F     L  H+r+H
  Carubv10024179m  92 HECPICGAEFAVGQALGGHMRKH 114
                      79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.76E-846114No hitNo description
PfamPF139128.0E-134772IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3694875IPR007087Zinc finger, C2H2
SMARTSM003550.234870IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
PfamPF139123.6E-1092116IPR007087Zinc finger, C2H2
PROSITE profilePS501579.74392119IPR007087Zinc finger, C2H2
SMARTSM003550.06392114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
KQSVEFSFSS FCEMERERSD MEMINKMANC LILLSKNQHQ NDTKSRVFAC KTCNKEFPSF  60
QALGGHRASH RRSAALEGHA PPSPKRVKPV KHECPICGAE FAVGQALGGH MRKHRGGAGG  120
GGGGRSLAPA TAPVTMKKSG GGNGKRVLCL DLNLTPLENE DLKLELGRLI F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114124RGGAGGGGGGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0071841e-176AC007184.4 Arabidopsis thaliana chromosome 2 clone T11P11 map mi54, complete sequence.
GenBankCP0026851e-176CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankBT0293301e-176BT029330.1 Arabidopsis thaliana At2g28710 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295104.11e-123hypothetical protein CARUB_v10024179mg, partial
SwissprotQ424102e-43ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLR0FYC61e-123R0FYC6_9BRAS; Uncharacterized protein (Fragment)
STRINGAT2G28710.13e-94(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-91C2H2 family protein