PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023893m
Common NameCARUB_v10023893mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 258aa    MW: 29036.1 Da    PI: 9.3652
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023893mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.78.3e-16187231550
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                      +r++r++kNRe+A rsR+RK+a++ eLe kv  Le+eN++L+ +l+
  Carubv10023893m 187 RRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENEKLR-RLK 231
                      79************************************9998.444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.6E-13180229No hitNo description
SMARTSM003382.4E-12183255IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.197185229IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-10187229No hitNo description
CDDcd147073.06E-22187232No hitNo description
PfamPF001706.9E-13187229IPR004827Basic-leucine zipper domain
PROSITE patternPS000360190205IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGSIRGNIEE PISQSLTRQN SLYSLKLHEV QTHLGSSGKP LGSMNLDELL KTVLSPAEEG  60
LVRQGSLTLP RDLSKKTVDE VWRDIQQDKN GNTTTHKQAT LGEITLEDLL LKAGVVTETI  120
VPQENVVNIA SHGQWVEYHQ PGQQQGFMSY PVCEMQEMVM MGGLSDTPQA PGRKRVAGEI  180
VEKTVERRQK RMIKNRESAA RSRARKQAYT HELEIKVSRL EEENEKLRRL KEAERILPSE  240
PPPDPKWKLR RTNSASL*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023893m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3342090.0AF334209.1 Arabidopsis thaliana bZIP protein DPBF4 mRNA, complete cds.
GenBankAY0846680.0AY084668.1 Arabidopsis thaliana clone 114632 mRNA, complete sequence.
GenBankBT0251750.0BT025175.1 Arabidopsis thaliana At2g41070 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294842.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 3
SwissprotQ9C5Q21e-176AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBLR0HR060.0R0HR06_9BRAS; Uncharacterized protein
STRINGXP_006294842.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18842883
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41070.31e-163bZIP family protein
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  3. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]