PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022186m
Common NameCARUB_v10022186mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 146aa    MW: 16821.1 Da    PI: 5.1095
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022186mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.13.3e-124793551
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51
                     k+ rr ++NRe+A+rsR++Kk++ eeL+e+v  L   N++Lk++l +
  Carubv10022186m 47 KKRRRTISNRESAKRSRLKKKKRFEELTEEVNRLNLRNQELKNRLAN 93
                     899***************************************77754 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.9E-1143114IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.764594IPR004827Basic-leucine zipper domain
PfamPF077161.1E-84593IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.4E-945108No hitNo description
SuperFamilySSF579598.04E-94795No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MFSTSMEPVH ICFDDAMITG DELNDILAFL QSDESDNPSE VVPVDEKKRR RTISNRESAK  60
RSRLKKKKRF EELTEEVNRL NLRNQELKNR LANVVSCGNE ISNENNRLKT ESVCLEIRLL  120
ELYRFLVAIQ SPISTTVTYI TELEI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14868RRRTISNRESAKRSRLKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022186m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301725.11e-100basic leucine zipper 4
SwissprotQ9LQ652e-77BZIP4_ARATH; Basic leucine zipper 4
TrEMBLR0ID762e-99R0ID76_9BRAS; Uncharacterized protein
STRINGXP_006301725.11e-100(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122322432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59530.14e-69basic leucine-zipper 4
Publications ? help Back to Top
  1. Guo YL, et al.
    Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis.
    Plant Physiol., 2011. 157(2): p. 757-69
    [PMID:21810963]
  2. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Ma H, et al.
    ZmbZIP4 Contributes to Stress Resistance in Maize by Regulating ABA Synthesis and Root Development.
    Plant Physiol., 2018. 178(2): p. 753-770
    [PMID:30126870]