PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022052m
Common NameCARUB_v10022052mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 118aa    MW: 13391.6 Da    PI: 11.0121
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022052mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.12.6e-141563149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ie +  r vt+skRrngi  K  ELSvLC + +a + +  +gk +++
  Carubv10022052m 15 KKIERSKDRLVTLSKRRNGIYTKLCELSVLCRIHIAFLGYTDSGKPFTF 63
                     6899*****************************************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.184767IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-14766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-20886IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-13929IPR002100Transcription factor, MADS-box
PfamPF003193.7E-151663IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MNTKKTKGKQ KINIKKIERS KDRLVTLSKR RNGIYTKLCE LSVLCRIHIA FLGYTDSGKP  60
FTFGSPSFQA VAERFLNSEA SSSSSLQQSL FTDHTNRMFK SYAHCTTMLL SRHVLRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022052m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301053.13e-52agamous-like MADS-box protein AGL29
TrEMBLR0HXI51e-80R0HXI5_9BRAS; Uncharacterized protein
STRINGXP_006301611.12e-81(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.15e-33AGAMOUS-like 64