PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021838m
Common NameCARUB_v10021838mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20757.8 Da    PI: 8.8839
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021838mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.21.3e-101763349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ie +    vt+s+Rrngi  K  ELS LC++ +a + +   gk +++
  Carubv10021838m 17 IEISKDILVTLSNRRNGIYTKLCELSFLCGVHIAFLGYTDYGKPFTF 63
                     55566667******************************999998888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.227767IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-8766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.29E-16878IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-8929IPR002100Transcription factor, MADS-box
PfamPF003192.1E-111763IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-82944IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-84465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MNTKKTKGKQ KINIKKIEIS KDILVTLSNR RNGIYTKLCE LSFLCGVHIA FLGYTDYGKP  60
FTFGSPSLQA VAERFLNSEA SSSSSLQQSL FTVHHKQNVQ ELCTLYNNVV EQTRAKEVKA  120
MKAAASMEPF PEDAWWKMHM TKEQDQEEAK KLLDKFEGLY EKLCDEIDVR SQRRDAARND  180
I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021838m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300349.11e-135agamous-like MADS-box protein AGL62
TrEMBLR0GBY21e-134R0GBY2_9BRAS; Uncharacterized protein
STRINGXP_006300349.11e-134(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.13e-53AGAMOUS-like 64