PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021762m
Common NameCARUB_v10021762mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18761.1 Da    PI: 9.1664
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021762mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.52e-141350442
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     +n   r vtf kR++g+lKK +EL +LC+  ++ ii+s+
  Carubv10021762m 13 DN-ATRRVTFRKRKAGLLKKINELTILCGLPACAIIYSE 50
                     44.4577*******************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.255150IPR002100Transcription factor, MADS-box
CDDcd002663.70E-21285No hitNo description
SuperFamilySSF554555.89E-21294IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-7323IPR002100Transcription factor, MADS-box
PfamPF003193.8E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MGRRKVTHQL IIDNATRRVT FRKRKAGLLK KINELTILCG LPACAIIYSE YKDGPELWPN  60
VNEVRSLLDR FSELPVEKQI KYMMDQKDLM EKMIQDAEKK LEKEKMHTRA MNLGIMASTN  120
DLTTESDCSE ELVKAAEVVE KKLKLIQERI KAVEAGAPII MRD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVTHQLIIDNATRRVTFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021762m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546010.0AC254601.1 Capsella rubella clone CAP30-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301344.11e-117agamous-like MADS-box protein AGL80
TrEMBLR0GEK31e-115R0GEK3_9BRAS; Uncharacterized protein
STRINGXP_006301344.11e-116(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.24e-93AGAMOUS-like 87