PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021715m
Common NameCARUB_v10021715mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 200aa    MW: 22161.5 Da    PI: 4.6329
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021715mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.84.2e-111249238
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLC.daevavi 38
                      i+nk  ++v f+kRrng+  KA+EL+ L  d ++a++
  Carubv10021715m 12 EIQNKNAKTVAFTKRRNGLYRKASELCLLSpDSQIAIL 49
                     699**************************757777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002661.39E-18383No hitNo description
SMARTSM004321.5E-6364IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.049340IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-8525IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-13577IPR002100Transcription factor, MADS-box
PfamPF003198.5E-111354IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-82540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGGKKHKINI SEIQNKNAKT VAFTKRRNGL YRKASELCLL SPDSQIAILA TPVSSNSHAS  60
FYSFGHSSVD QVVSSLLYDQ PPVLPANQEK RSGLGFWWED KGFDMSENVD ELKEAVDAVS  120
RMLNSARARL DGVVKSNQRD GRLVIHQEDE EEILQLRSEE TTTNQGDTSG SASNHLVSED  180
DTLYLDDDLF SDFNIDPLI*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021715m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301308.11e-146agamous-like MADS-box protein AGL97
SwissprotQ9C6334e-43AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLR0GEX71e-145R0GEX7_9BRAS; Uncharacterized protein
STRINGXP_006301308.11e-146(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.11e-87AGAMOUS-like 55
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]