PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021446m
Common NameCARUB_v10021446mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20768.7 Da    PI: 9.1878
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021446mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.11.3e-141563149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     krie +  r vt+skRrngi  K  ELSvLC++ +a + +  +gk +++
  Carubv10021446m 15 KRIERSKDRLVTLSKRRNGIYTKLCELSVLCGVHIAFLGYTDSGKPFTF 63
                     79******************************************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-16766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.885767IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-21883IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-14929IPR002100Transcription factor, MADS-box
PfamPF003193.8E-161663IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-142944IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-144465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MNTKKTKGKQ KINIKRIERS KDRLVTLSKR RNGIYTKLCE LSVLCGVHIA FLGYTDSGKP  60
FTFGSPSFQA VAERFLNSEA SSSSSLQQSL FTVHHKQNVQ ELCTLYNNVV EQTRAEEVKA  120
MKAAASMEPF PEDAWWKMHM TKEQDQEEAK KLLDKFEGLY EKLCDEIDAR SQRRDAARND  180
I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021446m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301053.11e-135agamous-like MADS-box protein AGL29
TrEMBLR0GE971e-134R0GE97_9BRAS; Uncharacterized protein
STRINGXP_006301053.11e-134(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.15e-61AGAMOUS-like 64