PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021012m
Common NameCARUB_v10021012mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 183aa    MW: 19999.3 Da    PI: 6.7946
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021012mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.11.6e-124284547
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47
                     ++ +rk +NRe+ArrsR RK++ ++ L+  v  L +eN +L  
  Carubv10021012m 42 RKRKRKLSNRESARRSRMRKQKHLDDLTVQVTHLRKENAQLVA 84
                     5789***********************************9965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.880.103.0E-51255IPR008917Transcription factor, Skn-1-like, DNA-binding domain
SMARTSM003381.7E-1638102IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.6840103IPR004827Basic-leucine zipper domain
PfamPF001703.3E-104283IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.49E-124294No hitNo description
CDDcd147026.72E-194393No hitNo description
PROSITE patternPS0003604560IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.6E-956112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MHNKTEMASS TSGNSSSTIS ITGLQNSGSE SDLRQRDLID ERKRKRKLSN RESARRSRMR  60
KQKHLDDLTV QVTHLRKENA QLVAGIAVTT QHYVTIEAEN DILRAQLLEL NHRLQSLNEI  120
VDFVESSSSS SFGFGMETGP GLVDVGGGGG FYDGVMNHMS IGFYNQPIMA SASTAADVFD  180
CC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14047ERKRKRKL
24146RKRKRK
34162RKRKRKLSNRESARRSRMRKQK
45461RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021012m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302882.11e-133bZIP transcription factor 44
SwissprotC0Z2L51e-105BZP44_ARATH; bZIP transcription factor 44
TrEMBLR0IC751e-132R0IC75_9BRAS; Uncharacterized protein
STRINGXP_006302882.11e-132(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.12e-85basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]