PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020674m
Common NameCARUB_v10020674mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family BES1
Protein Properties Length: 318aa    MW: 33903.6 Da    PI: 7.3426
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020674mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822199.41.1e-6121231121
           DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspess 93 
                      ++++r+ptw+ErEnnkrRERrRRaiaaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve DGttyrkg++++ e++e++g sa+asp+ss
  Carubv10020674m   2 TSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVELDGTTYRKGCSRPvERMEIGGGSATASPCSS 95 
                      5899**********************************************************************999***************** PP

           DUF822  94 lqsslkssalaspvesysaspksssfps 121
                      +q s+ ss++ sp++s+ a ++s + +s
  Carubv10020674m  96 YQPSPASSNFMSPASSSFANLTSGDGQS 123
                      **88888888888888776666554443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.0E-553123IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG  60
WIVELDGTTY RKGCSRPVER MEIGGGSATA SPCSSYQPSP ASSNFMSPAS SSFANLTSGD  120
GQSLIPWLKH LSTTSSSSAS SSSRLPNYLY IPGGSISAPV TPPLSSPTAR TPRMNPDWQQ  180
LNNSFFVSST PPSPTRQIIP DSEWFSGIQL AQSVPASPTF SLVSQNPFGF KEEAASAAGG  240
GGGSRMWTPG QSGTCSPAIP PGADQTADVP MSEAVAPPEF AFGSNTNGLV KAWEGERIHE  300
ESGSDDLELT LGNSSTR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankF9K200.0AC005679.1 Arabidopsis thaliana chromosome 1 BAC F9K20 sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankAY0903310.0AY090331.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds.
GenBankAY0504300.0AY050430.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302567.10.0hypothetical protein CARUB_v10020674mg
SwissprotQ9ZV880.0BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLR0IBF20.0R0IBF2_9BRAS; Uncharacterized protein
STRINGAT1G78700.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19172781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-171BES1/BZR1 homolog 4