PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020411m
Common NameCARUB_v10020411mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 400aa    MW: 42236.2 Da    PI: 6.7264
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020411mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.53.3e-4057180289
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                      ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  ++s +ss+s+ s++      
  Carubv10020411m  57 TTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFStLSVSLRSSGSTLSAPpskslp 150
                      789*************************************************************999999998888888888855555666666 PP

              TCP  89 .............................k 89 
                                                   +
  Carubv10020411m 151 lygalglthhhhqhqhqhqydeqggggafA 180
                      776666655443333444444444444441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-4162224IPR005333Transcription factor, TCP
PROSITE profilePS5136928.41163117IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDLSRNNNDT AAAAVTGGAR QLVDASLTIV PRSTPLEDST LSTTTTTTTN SVTAAATTTK  60
RSTKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA EPAIVAATGT  120
GTIPANFSTL SVSLRSSGST LSAPPSKSLP LYGALGLTHH HHQHQHQHQY DEQGGGGAFA  180
TAPLLGFHHH LQQQQAPVET ITDGESFSRK RYRSVDLSKE NDDQKQNESK SLKESDPAAA  240
PMWAVAPTSR ASGGNTFWML PVPTTAGNQM ESSSNNNNNT VGHRAPMWPF VNSAGAGGGG  300
GGGGGATHFM AGTGFSFPMD QYRGSPLQLG SFVAQPQPTQ NLGLSMPDSN LGMLAALNAA  360
YSRGGNGNAN AEQAVEHQEK PQQSEHDEDS REDNSNSSE*
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020411m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0791311e-132AC079131.4 Arabidopsis thaliana chromosome 1 BAC T18I24 genomic sequence, complete sequence.
GenBankAC0796041e-132AC079604.5 Arabidopsis thaliana chromosome 1 BAC T15M6 genomic sequence, complete sequence.
GenBankAY0813441e-132AY081344.1 Arabidopsis thaliana auxin-induced basic helix-loop-helix transcription factor, putative (At1g58100) mRNA, complete cds.
GenBankBT0084931e-132BT008493.1 Arabidopsis thaliana At1g58100 gene, complete cds.
GenBankCP0026841e-132CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302348.10.0transcription factor TCP8
SwissprotQ9C5180.0TCP8_ARATH; Transcription factor TCP8
TrEMBLR0GHN80.0R0GHN8_9BRAS; Uncharacterized protein
STRINGXP_006302348.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-171TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]