PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019353m
Common NameCARUB_v10019353mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 322aa    MW: 36080.1 Da    PI: 5.2029
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019353mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.42.1e-2194194198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+k+l++sdv++++r++lpkk ae+h   ++ +e++ +++ed++g  +W++k++y  +++s++yvl+ ++ +Fv+a+gL+ gDf++ +ld  ++
  Carubv10019353m  94 FQKELKNSDVSSLRRMILPKKAAEAHlpALECKEGIPIRMEDLDGlHVWTFKYRYwpNNNSRMYVLE-NTGDFVNAHGLQLGDFIMVYLDL-DS 185
                      99**************************777788899********9*********89999999***9.********************976.55 PP

                      E..EEEEE- CS
               B3  90 felvvkvfr 98 
                       ++v+++++
  Carubv10019353m 186 NNYVIQARK 194
                      667888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-2983201IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-2392195IPR015300DNA-binding pseudobarrel domain
CDDcd100178.34E-2992194No hitNo description
PfamPF023623.7E-1894195IPR003340B3 DNA binding domain
SMARTSM010195.5E-2494196IPR003340B3 DNA binding domain
PROSITE profilePS508639.92594196IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MMADENVETK ASTLIASVGH QGHGFGSGSG GHHGLSASVP LLGVNSKKRR MPRQRRSSSS  60
FNLLSLPPPM PLSPHVPTPL SARKIDPRKL RFLFQKELKN SDVSSLRRMI LPKKAAEAHL  120
PALECKEGIP IRMEDLDGLH VWTFKYRYWP NNNSRMYVLE NTGDFVNAHG LQLGDFIMVY  180
LDLDSNNYVI QARKASEEEE EEEDVTIIEE DDVYTNLTKI ENTVVNDLLI QDFNHHNDNS  240
SNNNSNNNIN NNKCSYYYPV IDDITTNTAS FVYDTTTLTS NDSPLDFLGG HTTTTTNTYY  300
SKFGSFEGLG SVENISLDDF Y*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0162650.0AF016265.1 Arabidopsis thaliana FUSCA3 (FUS3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293066.10.0hypothetical protein CARUB_v10019353mg
SwissprotQ9LW310.0FUS3_ARATH; B3 domain-containing transcription factor FUS3
TrEMBLR0H9C90.0R0H9C9_9BRAS; Uncharacterized protein
STRINGAT3G26790.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71382638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.11e-136B3 family protein