PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018599m
Common NameCARUB_v10018599mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 187aa    MW: 21638.5 Da    PI: 9.5529
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018599mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.1e-1167111549
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                      ++ +rk +NRe+A+rsR++K++ +ee      +L+++N++L ++l
  Carubv10018599m  67 RKKKRKLSNRESAKRSREKKQKHLEEMSIQLNQLKTQNQDLTNQL 111
                      6899************************************99665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-1263127IPR004827Basic-leucine zipper domain
PfamPF077162.2E-964111IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.4E-964111No hitNo description
PROSITE profilePS5021710.54265111IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.41E-967115No hitNo description
CDDcd147021.25E-1768119No hitNo description
PROSITE patternPS0003607085IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MMSTISPVFS AEPSLATFVP AFETGFTPWD ISHLFSVFDS SSSLDDPIPS FSTHDVAPTT  60
KNITDERKKK RKLSNRESAK RSREKKQKHL EEMSIQLNQL KTQNQDLTNQ LRYVLYHYRR  120
TNTENDRLRL EHRILQDKLL NMRQVLMFRQ ILERSSTNCA TWPCDNNSTV VTVQQDPSII  180
TNHVIV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16572ERKKKRKL
26687RKKKRKLSNRESAKRSREKKQK
36772KKKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018599m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292387.11e-136basic leucine zipper 4
TrEMBLR0HJ981e-135R0HJ98_9BRAS; Uncharacterized protein
STRINGXP_006292387.11e-136(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.19e-64basic leucine-zipper 5