PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017617m
Common NameCARUB_v10017617mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 331aa    MW: 36887.4 Da    PI: 6.7669
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017617mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.21.1e-10205248548
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                      kr +r   NR +A+rsR RK+++i eLe+ v +L++e + L  +
  Carubv10017617m 205 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPR 248
                      899********************************998777655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-13201265IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.588203255IPR004827Basic-leucine zipper domain
PfamPF001702.9E-9205249IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.0E-13205256No hitNo description
SuperFamilySSF579592.49E-11205259No hitNo description
CDDcd147033.68E-24206256No hitNo description
PROSITE patternPS000360208223IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAQLPPKIPT MTTPNWPDFS SQKLPSIAAT AAAAATAGPQ QQNPSWMDEF LDFSATRRGT  60
HRRSISDSIA FLEPPSSGVG NHHFDRFDDE QFMSMFNDDV HSSHNHHHHN MNNLNGNVGA  120
TRSSSNTSTP SDHNSLSDDD NKEAPPSDHD HHMDNNNIAN QNNPAGNNYN ESDEVQSQCK  180
TEPQDGPSAN QNSGGSSGNR IHDPKRVKRI LANRQSAQRS RVRKLQYISE LERSVTSLQT  240
EVSVLSPRVA FLDHQRLLLN VDNSAIKQRI AALAQDKIFK DAHQEALKRE IERLRQVYHQ  300
QSIKKMETNV SDQSPADIKP SVEKEQLLNV *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017617m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4013000.0AF401300.1 Arabidopsis thaliana transcription factor bZIP61 (BZIP61) mRNA, complete cds.
GenBankAY0873560.0AY087356.1 Arabidopsis thaliana clone 34553 mRNA, complete sequence.
GenBankAY0930530.0AY093053.1 Arabidopsis thaliana pelota-like protein (At3g58120) mRNA, complete cds.
GenBankBT0087280.0BT008728.1 Arabidopsis thaliana At3g58120 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291482.10.0basic leucine zipper 61
SwissprotQ9M2K40.0BZP61_ARATH; Basic leucine zipper 61
TrEMBLR0HGS40.0R0HGS4_9BRAS; Uncharacterized protein
STRINGXP_006291482.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17532777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.10.0bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalov√° A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]