PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016094m
Common NameCARUB_v10016094mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 723aa    MW: 79651.7 Da    PI: 5.0514
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016094mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.72.8e-20574670295
                      EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                      +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ l +ed  ++r+W++++++  ++ks++y+l+ ++ +Fvk ngL+egDf+v++  ++ ++
  Carubv10016094m 574 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISLAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVKTNGLQEGDFIVIY--SDvKC 664
                      79*************************999999********7778*******99777777777777.********************..55599 PP

                      E..EEE CS
               B3  90 felvvk 95 
                      ++++++
  Carubv10016094m 665 GKYLIR 670
                      988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-28568680IPR015300DNA-binding pseudobarrel domain
CDDcd100152.70E-38571672No hitNo description
SuperFamilySSF1019362.75E-22572666IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.602573675IPR003340B3 DNA binding domain
SMARTSM010195.6E-19573675IPR003340B3 DNA binding domain
PfamPF023623.2E-16574669IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MKSMHVAANA GDLAEDCGIL AGDGDEAILM DGMDEVGGEI WLDDHGGDHG HGDDDLIVHH  60
DPSLFYGDLP TLPDFPCMSS SSSSSTSPAP VNAIVSSASS SSAASSSTSS AASWAILRSD  120
GEDPAPNQNQ YGSGKCDESS GALQSTASME IPLDTSQGFG CGEGGGDCID MMETFGYMDL  180
LDSNEFFDTS AIFSQDDDTP NPNLMDQTLE RQQQDQVVVP MMDNNSGGDM QMMNSSLEQD  240
DDLATVFLEW LKNNKETVSA EDLRKVKIKK ATIESAARRL GGGKEAMKQL LKLILEWVQT  300
NHLQRRRTTT ITNNNNNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPPQ  360
QAFVSDPGFG YMPAPNYPQP PPEYLPLLES PQSWPPPPQS GPMPHQQFPM PPNSQYNQFG  420
EPTGFTGYNM NPYQYPYIPP GQMRDQRLLR LCSSATKEAR KKRMARQRRF LSHHHRHNNN  480
NSTNQQNQNQ VGETCTAAVA PQLNPVTTTT TGGTWMYWPN VPSVPPPQLP PPMETQLQTM  540
DRASSAASAM PRQQVVPDRR QGWKPEKNLR FLLQKVLKQS DVGNLGRIVL PKKEAETHLP  600
ELEARDGISL AMEDIGTSRV WNMRYRFWPN NKSRMYLLEN TGDFVKTNGL QEGDFIVIYS  660
DVKCGKYLIR GVKVRQPTGQ KQEAPPSSAA AAKRQNKSQR NINNNSPSAN VVVASPTSQT  720
VK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX681410.0X68141.1 A.thaliana mRNA for ABI3 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299887.10.0hypothetical protein CARUB_v10016094mg
SwissprotQ015930.0ABI3_ARATH; B3 domain-containing transcription factor ABI3
TrEMBLR0I4670.0R0I467_9BRAS; Uncharacterized protein
STRINGAT3G24650.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102802531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.10.0B3 family protein