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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10015438m | ||||||||
Common Name | CARUB_v10015438mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GeBP | ||||||||
Protein Properties | Length: 379aa MW: 41643.9 Da PI: 5.0407 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 124.8 | 3.9e-39 | 171 | 266 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 fqr+w+++Dei++LqGl+df+++tg+sp+d+++ +y+ vkk+isf+vsk q++eK+r+LKkK++++ k ak+g++p+f+k+hd+k+felsk Carubv10015438m 171 FQRVWTDNDEIAVLQGLLDFRKDTGVSPYDNTNTVYQLVKKNISFDVSKVQFMEKLRSLKKKYENNLGKaAKNGDDPTFAKPHDRKAFELSKLA 264 9******************************************************************99899********************** PP DUF573 96 Wg 97 Wg Carubv10015438m 265 WG 266 *8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 8.1E-32 | 171 | 266 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MSKKREDPPP ASSSEEEVSE TRSGEDDESS SEGEDVVSSR KPSAVTMKPV VALAAPSEKQ 60 QVSDSESGSD EESDDSDSEP ENVETKPPLT QSKDSSVLKN EVSDSESEAE KKDDAVTKPT 120 NQDSKKVKSS ENSVAKRARE TDEGVSSDVK KVKKVVSASP SGEEEKKKSC FQRVWTDNDE 180 IAVLQGLLDF RKDTGVSPYD NTNTVYQLVK KNISFDVSKV QFMEKLRSLK KKYENNLGKA 240 AKNGDDPTFA KPHDRKAFEL SKLAWGAIEK AIESAVKSNG KSKQVACVKH EHDSSLVNAI 300 NCQDLSAKSS SLVRTLTRFG VDELAAQQGL DRLTSEDKKS LEEQWKALQV REFDFYSQKT 360 GFVHQVLAKM AEAFRSNA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006299284.1 | 0.0 | hypothetical protein CARUB_v10015438mg | ||||
TrEMBL | R0G954 | 0.0 | R0G954_9BRAS; Uncharacterized protein | ||||
STRING | AT1G11510.1 | 2e-98 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G11510.1 | 5e-93 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Carubv10015438m |
Entrez Gene | 17890650 |