PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014439m
Common NameCARUB_v10014436mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 259aa    MW: 28340.9 Da    PI: 6.9639
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014439mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.47.2e-0985131551
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                      k  +r   NReA r++R++Kka+ + Le++v  L a N +L k+l+ 
  Carubv10014439m  85 KSKKRPLGNREAVRKYREKKKAKAASLEDEVMRLRAVNNQLMKRLQG 131
                      66788899**********************************99974 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.0E-1478149No hitNo description
SMARTSM003387.4E-1081148IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.80683130IPR004827Basic-leucine zipper domain
PfamPF077161.1E-1484138IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.95E-786130No hitNo description
CDDcd146866.89E-1189139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071294Biological Processcellular response to zinc ion
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDDGELEFSN SNMGGELPLT SCSMDSFFDE LLRDSHACTH THTCNPSGPE NTHTHTCLHV  60
HTKILPAQSE DKVSTDDTSE SSGKKSKKRP LGNREAVRKY REKKKAKAAS LEDEVMRLRA  120
VNNQLMKRLQ GQAALEAEVT RLKCLLVDIR GRIDGEIGSF PYQKPAAANV PYSYMMHPCN  180
MQCDVDNMYC LQNGNNGEGT LMNEQGLNGC EFDQLECLAN QNLAGKEIPL CSNGVGTFTV  240
NGSSTNKRKG GHRAAKAV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014439m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1174790.0AK117479.1 Arabidopsis thaliana At2g16770 mRNA for putative bzip transcription factor atbzip23, complete cds, clone: RAFL17-09-E13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298365.10.0basic leucine zipper 23
RefseqXP_023641855.10.0basic leucine zipper 23
SwissprotQ8GTS21e-173BZP23_ARATH; Basic leucine zipper 23
TrEMBLR0HNF10.0R0HNF1_9BRAS; Uncharacterized protein
STRINGCagra.0839s0005.1.p0.0(Capsella grandiflora)
STRINGXP_006298365.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.11e-169bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]