PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013748m
Common NameCARUB_v10013748mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 435aa    MW: 49613.4 Da    PI: 7.4047
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013748mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.53.9e-411493142135
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasecea 75 
                      + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i+++++t                    s +++s+   
  Carubv10013748m 149 PSRTDRHSKIKTAKGTRDRRMRLSLDVARELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIAKTlshqcgfssgdesqtrpalgSMDTSSDL-- 240
                      5799************************************************************8888877666666555555433333333.. PP

              TCP  76 esssssasnsssg..........................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                                                             + ++   k+k+++ ++    +l+k++rakar+ra++rt ekm++k k
  Carubv10013748m 241 ------------YelasmwtvddrgsntnttvetrgnkvDGRSMRGKRKRPEPRTPILKKLSKDERAKARERAKDRTMEKMMMKMK 314
                      ............0233333333333335566777888876666666788888888888*************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-41150312IPR005333Transcription factor, TCP
PROSITE profilePS5136932.39151209IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.574291308IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MNNNTFSSTT TTINDDYMLF PYNDHYSSQA VLPFSPSSSF NDILIQSTSN TSNNHLDHHP  60
HQFLQPSPFS QFEFVPDCSL LSSFLPQNNG HDDNQEIITN DNHHPSLLHP LNNTIGDQPA  120
EPSETITHIE DSQTISTSQD QKMKKAKKPS RTDRHSKIKT AKGTRDRRMR LSLDVARELF  180
GLQDMLGFDK ASKTVEWLLT QAKPEIIKIA KTLSHQCGFS SGDESQTRPA LGSMDTSSDL  240
YELASMWTVD DRGSNTNTTV ETRGNKVDGR SMRGKRKRPE PRTPILKKLS KDERAKARER  300
AKDRTMEKMM MKMKGRSQLV KVVEEGVHHQ GDQIVKNDIS KVNQSSFKVT HCEEDIEELG  360
KNDRFAVCND FVMTKKDHIS NESYDIINKL NSPFPIHHHR SQGEANSIEQ HQFTELHHFL  420
PKPRDLMYNY QNMC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013748m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0625810.0EF062581.1 Arabidopsis thaliana teosinte branched 1-like 1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023642531.10.0transcription factor TCP18 isoform X1
SwissprotA1YKT10.0TCP18_ARATH; Transcription factor TCP18
TrEMBLR0G5220.0R0G522_9BRAS; Uncharacterized protein
STRINGXP_006297719.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.10.0TCP family protein
Publications ? help Back to Top
  1. Lewis JM, et al.
    Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development.
    Plant Cell Rep., 2008. 27(7): p. 1217-25
    [PMID:18392625]
  2. Niwa M,Endo M,Araki T
    Florigen is involved in axillary bud development at multiple stages in Arabidopsis.
    Plant Signal Behav, 2013. 8(11): p. e27167
    [PMID:24305631]
  3. González-Grandío E,Cubas P
    Identification of gene functions associated to active and dormant buds in Arabidopsis.
    Plant Signal Behav, 2014. 9(2): p. e27994
    [PMID:24518068]
  4. Stes E, et al.
    Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(16): p. 5123-34
    [PMID:26136271]
  5. Yao C,Finlayson SA
    Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth.
    Plant Physiol., 2015. 169(1): p. 611-26
    [PMID:26149576]
  6. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  7. Seale M,Bennett T,Leyser O
    BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis.
    Development, 2017. 144(9): p. 1661-1673
    [PMID:28289131]
  8. Otori K,Tamoi M,Tanabe N,Shigeoka S
    Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477
    [PMID:28471323]
  9. Lantzouni O,Klermund C,Schwechheimer C
    Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings.
    Plant J., 2017. 92(5): p. 924-938
    [PMID:28977719]
  10. Yang Y, et al.
    The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis.
    PLoS Genet., 2018. 14(3): p. e1007296
    [PMID:29570704]