PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013632m
Common NameCARUB_v10013632mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 468aa    MW: 50505.9 Da    PI: 6.6789
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013632mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.6e-063563941154
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ ++++ L++l+ +      +K + a++L +A+eYIk L
  Carubv10013632m 356 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 394
                      5778999***********98.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.659345394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0067351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-11355409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.24E-6355399No hitNo description
Gene3DG3DSA:4.10.280.108.9E-10359403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
VIEKAMGDHH DFINSGSWWK VSSSSSPSSS SSMRASSIES GGSAVFHDKL HHHHHSLAST  60
TDHHLQMIGL GLSSQSPVDQ WNQSLLRGDS KAETSFGVML QENLNLDASS NANANTTSST  120
SSYQLQESDS SHHQALWRDP QTDFKPQTIM TNNNRGFFLD HQFSPHGSSS TDSSTVTCQG  180
FAVDNSSNNS LYAAAATTTP NSSSGMFHQH QLASGFGSSD QQPPRNHQQS SLGYSQYGSS  240
TANYDQMASA LPSTWFLRAS PPKPHSPLRF SNNATFWNPA AAGNTGPPPP HDASSNFFPA  300
LQPPQIHAPS FDEQSKNISE TRDSSNNEVK RGGGGDQPAA KRAKSEAASP SPALKVRKEK  360
MGDRIAALQQ LVSPFGKTDA ASVLSEAIEY IKFLHQQVSA LSNPYMKSGA SLQHQQSDHH  420
QPNEVEVSEE PDLRSRGLCL VPVSSTFPVT HDTTVDFWTP TFGGTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180540.0AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297611.10.0hypothetical protein CARUB_v10013632mg, partial
SwissprotQ8GXT30.0BH123_ARATH; Transcription factor bHLH123
TrEMBLR0HLE70.0R0HLE7_9BRAS; Uncharacterized protein (Fragment)
STRINGBra035761.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.10.0bHLH family protein