PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011576m
Common NameCARUB_v10011576mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 489aa    MW: 54352.1 Da    PI: 8.0996
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011576mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.83.1e-10184225445
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                       k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Carubv10011576m 184 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQEL 225
                      6889*************************8766666655544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-7181258IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.289183227IPR004827Basic-leucine zipper domain
PfamPF001702.0E-7184225IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-7185227No hitNo description
CDDcd147086.80E-23185237No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-7186229No hitNo description
PROSITE patternPS000360188203IPR004827Basic-leucine zipper domain
PfamPF141442.5E-29266341IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MANHRISEAT NHNHNHHHLP YSLLHGLNNN HPPPAFINQD GSGSFDFGEL EEAIVLQGVK  60
YRNDEAKPPL LGGGGGGTTL EMFPSWPIRT HQTLPTESSK SGGESSDSGS ANFSGKAESQ  120
QPDSPMSSKP QNHHLMLQHH NNNNNNMANS SSTSALPSTS RTLPPPKPSE DKRKATTSGK  180
QLDAKTLRRL AQNREAARKS RLRKKAYVQQ LESSRIKLSQ LEQELQRARS QGLFMGGCGP  240
PGPNITSGAA MFDMEYGRWL EDDNRHMSEI RTGLQAHLSD NDLRLIVDGY IAHFDEIFRL  300
KAVAAKADVF HLIIGTWMSP AERCFIWMAG FRPSDLIKIL VTQMDLLTEQ QLMGIYSLQH  360
SSQQAEEALS QGLEQLQQSL IDTLAASPVV DGMQQMAVAL GKISNLEGFI RQADNLRQQT  420
VHQLRRILTV RQAARCFLVI GEYYGRLRAL SSLWLSRPRE TLMSDETSCQ TTTDLQIVQS  480
SRNHFSNF*
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011576m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3147570.0AJ314757.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP21 gene).
GenBankHQ1327430.0HQ132743.1 Arabidopsis thaliana bZIP21 (At1g08320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303631.10.0transcription factor TGA9
RefseqXP_023644758.10.0transcription factor TGA9
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLR0I2T40.0R0I2T4_9BRAS; Uncharacterized protein
STRINGXP_006303631.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55242441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.30.0bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]