PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011303m
Common NameCARUB_v10011303mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18697.9 Da    PI: 9.7767
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011303mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.64.4e-151150342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i ++s r vtf kR+ g+lKK +EL +LC+  ++ ii+s+
  Carubv10011303m 11 ITDNSTRRVTFRKRKDGLLKKIKELTILCGLPACAIIYSE 50
                     789999*********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-17160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.745150IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-21294IPR002100Transcription factor, MADS-box
CDDcd002669.89E-21285No hitNo description
PRINTSPR004049.0E-8323IPR002100Transcription factor, MADS-box
PfamPF003199.9E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MGRRKVTHQL ITDNSTRRVT FRKRKDGLLK KIKELTILCG LPACAIIYSE YKDGPELWPN  60
VNEVRSLLDR LSELPVEKQT KYMMDQKDLM NKMIQDAEKK LEKEKAYTRA MKLGIMASTS  120
DITTDTDCSE ELAKAAEVID KKLKVIQERI KVVEAGAPII KRD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVTHQLITDNSTRRVTFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011303m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065511e-148AC006551.6 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete sequence.
GenBankAY1412501e-148AY141250.1 Arabidopsis thaliana MADS-box protein AGL87 mRNA, complete cds.
GenBankCP0026841e-148CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306009.21e-114agamous-like MADS-box protein AGL80 isoform X1
TrEMBLR0GSK71e-114R0GSK7_9BRAS; Uncharacterized protein
STRINGXP_006306009.11e-115(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.23e-98AGAMOUS-like 87