PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010909m
Common NameCARUB_v10010909mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 169aa    MW: 18328.4 Da    PI: 11.0559
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010909mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP26.32.4e-084270230
              TCP  2 agkkdrhskihTkvggRdRRvRlsaecaa 30
                     ++ k++++++h kv+gR+RR R+sa caa
  Carubv10010909m 42 TPTKRPSKDRHIKVDGRGRRLRISAICAA 70
                     6789************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-44870IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MESHKNNNKK NHHQTTGLTH LVPFIRPIST PNSTTTVSTT TTPTKRPSKD RHIKVDGRGR  60
RLRISAICAA PTTQTIPANI STLNVSLRSS GRRASQNAAV FGFQQQLYNP KPFREEEPNS  120
LDQEPGSSSP KPGSEALNQE PGLTQSRTQN MIHTTYVGSG GSNVSLDK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010909m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023632857.13e-78LOW QUALITY PROTEIN: transcription factor TCP23
SwissprotQ9LQF01e-44TCP23_ARATH; Transcription factor TCP23
TrEMBLR0IG141e-119R0IG14_9BRAS; Uncharacterized protein
STRINGXP_006304392.11e-120(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.17e-33TCP family protein