PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010438m
Common NameCARUB_v10010438mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 178aa    MW: 20113.9 Da    PI: 8.598
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010438mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.39.6e-141564150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     k+ie +  r v++skR+n i  K  ELSvLCd++va + +  +gk y++ 
  Carubv10010438m 15 KKIEREEDRLVSLSKRKNSIYTKLCELSVLCDVNVAFLGYTGSGKPYTFG 64
                     6899999*****************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-15766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.605767IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-21878IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-13929IPR002100Transcription factor, MADS-box
PfamPF003191.3E-141663IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MSSKKTKGRQ KIKIKKIERE EDRLVSLSKR KNSIYTKLCE LSVLCDVNVA FLGYTGSGKP  60
YTFGSPSFQA VAERFHNGEA SSSFSSLQRS ANTDYKANIQ QLCEFYNNMV ERARDEEAKA  120
TKAAVSMEPL PEDTWWKVPL EEVKDQEEMK QLLAKFEGLN EKLCDELAAR SQKKDVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010438m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305700.11e-129agamous-like MADS-box protein AGL29
TrEMBLR0INB31e-128R0INB3_9BRAS; Uncharacterized protein
STRINGXP_006305700.11e-129(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.13e-54AGAMOUS-like 64