PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009670m
Common NameCARUB_v10009673mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 337aa    MW: 36993.2 Da    PI: 5.2313
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009670mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.34.5e-10149204560
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                      kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  ++     l 
  Carubv10009670m 149 KRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLYQRDTNGLA 204
                      9*****************************************99988877666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-15145209IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.829147210IPR004827Basic-leucine zipper domain
PfamPF001701.6E-8149203IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-7149194No hitNo description
SuperFamilySSF579591.62E-10149200No hitNo description
CDDcd147037.97E-23150199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MENSADPPPP PPKLSDPIHP HPIPNADPVP ASSFHRRSRS DDMSMFMFMD PLSSGAPPSS  60
DDLPSDDDLF SSFIDVDSLT SNPNPFPNPS LSSNSVSGAI NPPPPSSRPR HRHSNSVDAG  120
CAMYAGEIMD AKKAMPPEKL SELWNIDPKR AKRILANRQS AARSKERKAR YIQELERKVQ  180
SLQTEATTLS AQLTLYQRDT NGLANENTEL KLRLQAMEQQ AQLRNALNEA LRKEVERMKM  240
ETGEISGNSD SFDMGMQQIQ YSSSTFMAIP PYHGSMNGQD MQMHTSFNPM EMSNSQSVSE  300
FLQNGRLQGL EISSNSSSLV KSEGPSLSAS ESSSAY*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00129DAPTransfer from AT1G06850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009670m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4198520.0AJ419852.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBankAY0624740.0AY062474.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850; F4H5.7) mRNA, complete cds.
GenBankBT0001020.0BT000102.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305298.10.0transcription factor RF2b
SwissprotQ6S4P44e-81RF2B_ORYSJ; Transcription factor RF2b
TrEMBLR0IIC00.0R0IIC0_9BRAS; Uncharacterized protein
STRINGCagra.1671s0308.1.p0.0(Capsella grandiflora)
STRINGXP_006305297.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135551727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06850.11e-141basic leucine-zipper 52
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]