PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009399m
Common NameCARUB_v10009399mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 390aa    MW: 42499.1 Da    PI: 9.743
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009399mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.81.3e-14310367561
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke.vaklks 61 
                      +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+k+  e+ k+  ++lk 
  Carubv10009399m 310 RRQKRMIKNRESAARSRARKQAYTLELEAEIESLKQLNQDLQKKQTEIMKTqNSELKE 367
                      79***************************************99887776651455554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-13306371IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.461308359IPR004827Basic-leucine zipper domain
CDDcd147078.41E-23310361No hitNo description
Gene3DG3DSA:1.20.5.1708.1E-14310369No hitNo description
PfamPF001701.5E-12310368IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.88E-10310359No hitNo description
PROSITE patternPS000360313328IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGTHINFDNL GGDSSGGNGC NTNQSKPLAR QSSLYSLTFD ELQSTLGEPG KDFGSMNMDE  60
LLKNIWSAEE TQAFMTTPSS VAASGPSGYV PGGNGLQRQG SLTLPRTLSQ KTVDEVWKHL  120
NSKDGDNGNN RTDLPERQQT LGEMTLEDFL LRAGVVKEDN NSTQQKDNSS GFYANNGAAG  180
LGFGFGQLNQ NSISFNSNNS SMHLNQAPGL GLEVGGTMQQ PHQRQQQQPH QRLRPTIFPK  240
QANVTFAPVN MVNRGLDGPV NSNIGGGGVT VAATSPGTSS AENNTWSSPV PYVFGRGRRS  300
NTGLEKVVER RQKRMIKNRE SAARSRARKQ AYTLELEAEI ESLKQLNQDL QKKQTEIMKT  360
QNSELKESVK QPPWLAKTQC LRRTLTGPW*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00087SELEXTransfer from AT1G49720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009399m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0935440.0AF093544.1 Arabidopsis thaliana clone 1 abscisic acid responsive elements-binding factor (ABRE) mRNA, complete cds.
GenBankAK2269830.0AK226983.1 Arabidopsis thaliana mRNA for abscisic acid responsive elements-binding factor, complete cds, clone: RAFL09-41-C22.
GenBankBT0085750.0BT008575.1 Arabidopsis thaliana clone U19471 putative abscisic acid responsive elements-binding factor (At1g49720) mRNA, complete cds.
GenBankBT0086470.0BT008647.1 Arabidopsis thaliana clone RAFL09-77-C02 (R19471) putative abscisic acid responsive elements-binding factor (At1g49720) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305034.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 4 isoform X1
SwissprotQ9M7Q50.0AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBLR0GPT80.0R0GPT8_9BRAS; Uncharacterized protein
STRINGXP_006305034.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73427129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49720.10.0abscisic acid responsive element-binding factor 1
Publications ? help Back to Top
  1. Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF
    Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.
    Plant Mol. Biol., 2018. 97(1-2): p. 149-163
    [PMID:29680877]