PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10008056m
Common NameCARUB_v10008056mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 221aa    MW: 25201.2 Da    PI: 10.0169
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10008056mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.67e-181050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     +ien++ r+ tf kR++g lKKA EL +LCd+ ++v++ s+
  Carubv10008056m 10 FIENETARKSTFKKRKKGFLKKADELATLCDVPICVVVNSP 50
                     8*************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-25160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.628149IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-24295IPR002100Transcription factor, MADS-box
CDDcd002662.28E-15285No hitNo description
PRINTSPR004041.1E-10323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-181051IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MTRKKVKMAF IENETARKST FKKRKKGFLK KADELATLCD VPICVVVNSP YDAAPEVWPS  60
RETANKVVAQ WSKMSVMDKT KKMVNQETYL QQRIAKATES WRKARKENKE LEMKNMMFDC  120
LSTKTSVPCI PKCDLRDFGS VIEQHLKDVN LRMEHLKRNE VEGSSSSLVH AADVATTSTV  180
IPMLEMGSSS VGFHEKIRDQ IENTLNVKKT DKDLDLNKKW *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKMAFIENETARKSTFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10008056m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279117.11e-163agamous-like MADS-box protein AGL80
SwissprotQ9FJK35e-52AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLR0GIB01e-161R0GIB0_9BRAS; Uncharacterized protein
STRINGXP_006279117.11e-162(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.13e-89M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]