PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10007844m
Common NameCARUB_v10007844mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 249aa    MW: 28750 Da    PI: 6.7976
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10007844mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.41.2e-11135186556
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                      ++ +r+++NRe+A+rsR RK+  i++L++ v  L+ eN++L ++l     + 
  Carubv10007844m 135 RKRKRMESNRESAKRSRMRKQSHIDNLRNQVNRLDLENRELGNRLRLVLHQL 186
                      67899************************************98877655555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.5E-11124188No hitNo description
SMARTSM003382.9E-14131195IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.898133196IPR004827Basic-leucine zipper domain
PfamPF001702.4E-9135180IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.59E-10135186No hitNo description
CDDcd147029.41E-18136187No hitNo description
PROSITE patternPS000360138153IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
IFFIMLSTVP AFSFSEPGLV NQFSGFQTGF TSWEWDCSDL FSVDHLSLEP EPAVPSPCYG  60
ESDAGSVRTN SGNHNMKTGS DEFCTGFDDA NQSDGLAKEP GSEDHKQLTA ITNFGSGEQN  120
HDRKKLTQPE MTDERKRKRM ESNRESAKRS RMRKQSHIDN LRNQVNRLDL ENRELGNRLR  180
LVLHQLQRVN TDNNRLVTEQ EILRLRLSEM RRVLIVRQLQ QQQQWELHNR RMIMTEQNHP  240
SSIIDQHL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122138RKKLTQPEMTDERKRKR
2147152KRSRMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10007844m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937251e-153AB493725.1 Arabidopsis thaliana At4g37730 gene for hypothetical protein, partial cds, clone: RAAt4g37730.
GenBankAL0357091e-153AL035709.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T28I19 (ESSA project).
GenBankAL1615921e-153AL161592.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88.
GenBankCP0026871e-153CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286269.20.0bZIP transcription factor RISBZ4
TrEMBLR0FAV80.0R0FAV8_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006286269.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37730.11e-114basic leucine-zipper 7