PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10007591m
Common NameCARUB_v10007591mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 367aa    MW: 41574.5 Da    PI: 8.1041
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10007591mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.92e-21755351
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ++++s +++++s+R+++i+KKAe LS+LCd+ev+vi + + g+l+++++
  Carubv10007591m  7 SSSSSLASTSLSNRLETIFKKAEQLSILCDTEVCVIHYEPGGELQTWPK 55
                     899********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0031756IPR002100Transcription factor, MADS-box
PfamPF003192.0E-121453IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-141589IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.5121557IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MPSLPPSSSS SLASTSLSNR LETIFKKAEQ LSILCDTEVC VIHYEPGGEL QTWPKEREKV  60
RDMALRYSQL NQALRRKKRV DLSEFLNEKK QKGLENLNKK RKTTSLEKKP VDILKYPISD  120
HYSPYQISKL IQSLELNVSK LQERLRSVEL QKKHRQSLAS SSSYLNHQTK SLNPSQFSLF  180
MYNHGDNTLS QIPVSASNLK QDFSALLQES QLKNQKVKQE LCGYDQNINI SDITNNNSFQ  240
HPCVSNKESV KNFGSMNQLM QKEFYGGDQN LYTSDITNSN VPDPSLSNTV SYEFCSDTCG  300
NNMVGNTSFS QDITDMSSTY DFNFDESSLL QKSNLPSAST IPDSYLLSNN MGNFNSNSFQ  360
QLSRFF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10007591m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282518.20.0agamous-like MADS-box protein AGL75
SwissprotQ9FLL01e-111AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLR0F2830.0R0F283_9BRAS; Uncharacterized protein
STRINGXP_006282518.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.11e-104AGAMOUS-like 75
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]