PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006251m
Common NameCARUB_v10006251mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 449aa    MW: 49306.8 Da    PI: 9.0674
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006251mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.33.9e-14368417554
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                      +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+k+  e+ +
  Carubv10006251m 368 RRQKRMIKNRESAARSRARKQAYTMELEAEIAQLKELNEELQKKQVEIME 417
                      69*************************************99876555444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.4E-14364429IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.473366411IPR004827Basic-leucine zipper domain
PfamPF001707.4E-12368424IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-10368420No hitNo description
CDDcd147071.89E-26368422No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-13368424No hitNo description
PROSITE patternPS000360371386IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MGSRTDFKNF VDGLTDEAAI HPKQPMIGTT LPLTRQNSVF SLTFDEFQNS WGGGIGKDFG  60
SMNMDELLKN IWTAEESHSM MGNNASFNNI NNGNALINNN GGLSVGVGGE TGGGFLTGGS  120
LQRQGSLTLP RIISQKTVDD VWKELMKEDD VGNVVGNGGT SGIPQRQQTL GEMTLEEFLL  180
RAGVVREEPQ PVESVNNFNA GFYGFGNNAG LGTARNGIVA NQPHDLAGNG AVVRPDLLTT  240
QTQPLQMQQP QKVHQPQQLI QKQERPFPKQ TTIAFSNTVE AVNHSQPATQ FQEVKPSILG  300
MRDHHMNNNL LQAVDFKTGV TVAAVSPGSQ MSPDLTPKSA LDASLSPAPY MFGRVRKTGA  360
VLEKVIERRQ KRMIKNRESA ARSRARKQAY TMELEAEIAQ LKELNEELQK KQVEIMEKQK  420
NQLLEPLRQP WGMGCKRQCL RRTLTGPW*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00038PBMTransfer from AT4G34000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006251m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:16284313}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534080.0AK353408.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-J01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284949.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 6 isoform X1
RefseqXP_023635587.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 6 isoform X1
RefseqXP_023635588.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 6 isoform X1
SwissprotQ9M7Q30.0AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6
TrEMBLR0F7H30.0R0F7H3_9BRAS; Uncharacterized protein
STRINGXP_006284949.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73427129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34000.20.0abscisic acid responsive elements-binding factor 3
Publications ? help Back to Top
  1. Zhao Q, et al.
    Regulation and function of Arabidopsis AtGALK2 gene in abscisic acid response signaling.
    Mol. Biol. Rep., 2018.
    [PMID:24078097]
  2. Bao Y, et al.
    The tumor necrosis factor receptor-associated factor (TRAF)-like family protein SEVEN IN ABSENTIA 2 (SINA2) promotes drought tolerance in an ABA-dependent manner in Arabidopsis.
    New Phytol., 2014. 202(1): p. 174-87
    [PMID:24350984]
  3. González-Grandío E,Cubas P
    Identification of gene functions associated to active and dormant buds in Arabidopsis.
    Plant Signal Behav, 2014. 9(2): p. e27994
    [PMID:24518068]
  4. Xie M, et al.
    AtWNK9 is regulated by ABA and dehydration and is involved in drought tolerance in Arabidopsis.
    Plant Physiol. Biochem., 2014. 77: p. 73-83
    [PMID:24561249]
  5. Kim EY,Seo YS,Park KY,Kim SJ,Kim WT
    Overexpression of CaDSR6 increases tolerance to drought and salt stresses in transgenic Arabidopsis plants.
    Gene, 2014. 552(1): p. 146-54
    [PMID:25234727]
  6. Zhang H, et al.
    The RING finger ubiquitin E3 ligase SDIR1 targets SDIR1-INTERACTING PROTEIN1 for degradation to modulate the salt stress response and ABA signaling in Arabidopsis.
    Plant Cell, 2015. 27(1): p. 214-27
    [PMID:25616872]
  7. Baek D, et al.
    A Role for Arabidopsis miR399f in Salt, Drought, and ABA Signaling.
    Mol. Cells, 2016. 39(2): p. 111-8
    [PMID:26674968]
  8. Bao Y, et al.
    Overexpression of the NDR1/HIN1-Like Gene NHL6 Modifies Seed Germination in Response to Abscisic Acid and Abiotic Stresses in Arabidopsis.
    PLoS ONE, 2016. 11(2): p. e0148572
    [PMID:26849212]
  9. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  10. Li X, et al.
    Dual Function of NAC072 in ABF3-Mediated ABA-Responsive Gene Regulation in Arabidopsis.
    Front Plant Sci, 2016. 7: p. 1075
    [PMID:27486475]
  11. Wang Z, et al.
    Overexpressing Arabidopsis ABF3 increases tolerance to multiple abiotic stresses and reduces leaf size in alfalfa.
    Plant Physiol. Biochem., 2016. 109: p. 199-208
    [PMID:27721135]
  12. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  13. Kerr TCC, et al.
    Ectopic expression of two AREB/ABF orthologs increases drought tolerance in cotton (Gossypium hirsutum).
    Plant Cell Environ., 2018. 41(5): p. 898-907
    [PMID:28098349]
  14. Lyzenga WJ,Sullivan V,Liu H,Stone SL
    The Kinase Activity of Calcineurin B-like Interacting Protein Kinase 26 (CIPK26) Influences Its Own Stability and that of the ABA-regulated Ubiquitin Ligase, Keep on Going (KEG).
    Front Plant Sci, 2017. 8: p. 502
    [PMID:28443108]
  15. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]
  16. Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF
    Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.
    Plant Mol. Biol., 2018. 97(1-2): p. 149-163
    [PMID:29680877]
  17. Kim HJ, et al.
    Confirmation of Drought Tolerance of Ectopically Expressed AtABF3 Gene in Soybean.
    Mol. Cells, 2018. 41(5): p. 413-422
    [PMID:29754472]