PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005377m
Common NameCARUB_v10005377mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 296aa    MW: 33424.3 Da    PI: 6.5052
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005377mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.36e-18190285198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                      f+ v+++s+v+ ++ l++p k ++++++  +++  + +++ +  +W +k++  +++++  +++GWk+Fv++n+L+e D++vF+ + ++ +  +l
  Carubv10005377m 190 FLVVMKRSHVS-KCFLTIPYKWCKKNNLLARQE--V-VMQIDQMKWVMKFNLFGSRCSGGISTGWKKFVQDNNLCESDVCVFEPMkSEkQPLHL 279
                      55566555555.567***********8886664..4.466778888888877777777679**********************77244555666 PP

                      EEEEE- CS
               B3  93 vvkvfr 98 
                      +v +fr
  Carubv10005377m 280 YVYIFR 285
                      666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.473132IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-5230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-5230IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.489189287IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-17190285IPR015300DNA-binding pseudobarrel domain
PfamPF023628.7E-16190285IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-19190285IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.2E-16190287IPR003340B3 DNA binding domain
CDDcd100178.08E-16190285No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MFVKDHSLKE NDLLVFKFHG LSEFEVLIFD GQTLCEKPTS YFVRKCGHAD KTKCTDFTAT  60
SSRSPEILFN PVDVEATPNQ QRLISPVDNE LDDLIDIDVD IETMLTPHLV VSQTGCEQLE  120
HFNSDIDTAY AQIPVISPAS TGRVSEEKYP LSGLKKMQGE INNDSLDHKA AGRKNKTLSL  180
AQRVITPDGF LVVMKRSHVS KCFLTIPYKW CKKNNLLARQ EVVMQIDQMK WVMKFNLFGS  240
RCSGGISTGW KKFVQDNNLC ESDVCVFEPM KSEKQPLHLY VYIFRVAEAE STNKG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4411171e-123AJ441117.1 Arabidopsis thaliana mRNA for auxin response factor 36 (arf36 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284220.10.0hypothetical protein CARUB_v10005377mg
SwissprotQ8RYD11e-114REM16_ARATH; B3 domain-containing protein REM16
TrEMBLR0H0Z00.0R0H0Z0_9BRAS; Uncharacterized protein
STRINGAT4G33280.11e-112(Arabidopsis thaliana)
STRINGBra037010.1-P1e-111(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-107B3 family protein