PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005321m
Common NameCARUB_v10005287mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 307aa    MW: 33274.8 Da    PI: 8.6088
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005321mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_174.51.4e-23221283163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkr++rkq+NRe+ArrsR+RK+ae+e+L+ +v++L++eN++L++el++l+ e++klk+e+
  Carubv10005321m 221 ERELKRQKRKQSNRESARRSRLRKQAECEQLQLRVESLSNENQSLRDELQRLSSECEKLKTEN 283
                      89**********************************************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.7E-29194IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1705.4E-20217281No hitNo description
PfamPF001701.7E-21221283IPR004827Basic-leucine zipper domain
SMARTSM003381.5E-21221285IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.518223286IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.19E-11224280No hitNo description
CDDcd147023.04E-23226276No hitNo description
PROSITE patternPS000360228243IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGTSEDKMPF KPSKPTSSAQ EVPPTPYPDW GNSMQAYYGG GGTPNPFFPS PVGSPSPHPY  60
MWGAQHHMMP PYGTPVPYPA MYPPGAVYAH PNMPMPPNAG PTNKEIVKDQ GSGKKSKGNS  120
KKKGEGGGDK ALSGSGNDGA SHSDESVTAG SSDENDENAN QQEQGSVRKP SFGQMLADAS  180
SQSTTGEIQG SVPMKPVAPG TNLNIGMDLW SSQAGVPMKD ERELKRQKRK QSNRESARRS  240
RLRKQAECEQ LQLRVESLSN ENQSLRDELQ RLSSECEKLK TENNSIQVTI SENHNRTIFR  300
AFSYFA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237243RRSRLRK
2237244RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005321m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8432570.0AJ843257.1 Arabidopsis thaliana mRNA for Z-box binding factor 2 protein (ZBF2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284152.10.0G-box-binding factor 1
RefseqXP_023634545.10.0G-box-binding factor 1
SwissprotP427740.0GBF1_ARATH; G-box-binding factor 1
TrEMBLR0GJK80.0R0GJK8_9BRAS; Uncharacterized protein
STRINGCagra.5996s0003.1.p0.0(Capsella grandiflora)
STRINGXP_006284152.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-172G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]