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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
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v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10003757m | ||||||||
Common Name | CARUB_v10003757mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 221aa MW: 25079.2 Da PI: 10.0168 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.7 | 6.2e-18 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +ien++ r+ tf kR++g lKKA EL +LCd+ ++v++ s+ Carubv10003757m 10 FIENETSRKSTFKKRKKGFLKKADELATLCDVPICVVVNSP 50 8*************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.881 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.1E-25 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.68E-15 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 8.11E-24 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-18 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-11 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MTRKKVKMAF IENETSRKST FKKRKKGFLK KADELATLCD VPICVVVNSP YDAAPEVWPS 60 RETANKVVAL WSKMSVMDKT KKMVNQETYL QQRIAKATES WRKARKENKE LEMKNIMFDC 120 LSAKTSVPCI PKCDLRDFGS VIEQHLKDVN LRMEILKRNE VEGSSSSLVL AADVATTSTV 180 IPMLEMGSSS VGFHETIRDK IENTLNVKKT DKDLDLNKKW * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKMAFIENETSRKSTFKKRK |
2 | 21 | 25 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10003757m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006286819.1 | 1e-161 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 2e-54 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | R0FCA3 | 1e-160 | R0FCA3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006286819.1 | 1e-161 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26630.1 | 9e-88 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10003757m |
Entrez Gene | 17881534 |
Publications ? help Back to Top | |||
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