PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003757m
Common NameCARUB_v10003757mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 221aa    MW: 25079.2 Da    PI: 10.0168
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003757mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.76.2e-181050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     +ien++ r+ tf kR++g lKKA EL +LCd+ ++v++ s+
  Carubv10003757m 10 FIENETSRKSTFKKRKKGFLKKADELATLCDVPICVVVNSP 50
                     8*************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.881149IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-25160IPR002100Transcription factor, MADS-box
CDDcd002665.68E-15285No hitNo description
SuperFamilySSF554558.11E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-11323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-181051IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MTRKKVKMAF IENETSRKST FKKRKKGFLK KADELATLCD VPICVVVNSP YDAAPEVWPS  60
RETANKVVAL WSKMSVMDKT KKMVNQETYL QQRIAKATES WRKARKENKE LEMKNIMFDC  120
LSAKTSVPCI PKCDLRDFGS VIEQHLKDVN LRMEILKRNE VEGSSSSLVL AADVATTSTV  180
IPMLEMGSSS VGFHETIRDK IENTLNVKKT DKDLDLNKKW *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKMAFIENETSRKSTFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003757m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286819.11e-161agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-54AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLR0FCA31e-160R0FCA3_9BRAS; Uncharacterized protein
STRINGXP_006286819.11e-161(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.19e-88M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]