PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003716m
Common NameCARUB_v10003716mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 282aa    MW: 32287.6 Da    PI: 9.5439
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003716mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.34.8e-192773550
                     SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
           SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                     +k + +  +s R ++++KKA+ELS+LCd+ev+vi+++ +g+l ++++
  Carubv10003716m 27 SKKKTTMNLSLREQTMFKKASELSILCDIEVCVIYYGRDGELvKTWP 73
                     4555556699******************************9747887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.3E-8474IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.2882768IPR002100Transcription factor, MADS-box
PfamPF003193.8E-122969IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-1430109IPR002100Transcription factor, MADS-box
CDDcd002661.49E-1834100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSTKKESKLS VRNQTCFKKP SSLSSVSKKK TTMNLSLREQ TMFKKASELS ILCDIEVCVI  60
YYGRDGELVK TWPEDRTKVR DMAERYSKLD ERVRRKKRTN LSQFLNKKIL NDKKTSFDNK  120
DNKFYEKVLE MQASLETGLR MLQDKLRLLQ PQNQTESDQC RAVSSSTKDP HQQWTKTEQD  180
LSTSSLSQHH QSKFSVFLYN HGNGSFCQLP DSVSSFDPST STTLLGTQGS GLRSNCNNFD  240
LPMVFPPQMQ TQSSLVHFDQ FAGWTQPPSS FVDPMMFSCY N*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003716m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290011.10.0agamous-like MADS-box protein AGL53
SwissprotQ7X9H91e-115AGL93_ARATH; Agamous-like MADS-box protein AGL93
TrEMBLR0HD690.0R0HD69_9BRAS; Uncharacterized protein
STRINGXP_006290077.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.11e-100AGAMOUS-like 53
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]