PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002823m
Common NameCARUB_v10002823mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 167aa    MW: 18583.7 Da    PI: 4.4093
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002823mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF252.5e-0822471540
                     HHHHHHHHHHHHHHHHHT-EEEEEEE CS
           SRF-TF 15 kRrngilKKAeELSvLCdaevaviif 40
                      R++ ++KK +ELS LCd++++++++
  Carubv10002823m 22 ARLAELIKKTNELSNLCDVRACLVVL 47
                     59999*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500668.676147IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-12390IPR002100Transcription factor, MADS-box
PfamPF003195.9E-72248IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MGRRRVTLDW ANQRVKRANI KARLAELIKK TNELSNLCDV RACLVVLDRE VDQVVVWPST  60
QEANSLMEKY YSLTEHQRNK KAIDPESYIQ ISIEKIEKKI ANTRKAIEEL EIDHLMYELN  120
SGHQEGDAIF GDGEEGDAIF GDGEEGDAIF GDGEEGDAIF GDGGGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002823m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289339.21e-109agamous-like MADS-box protein AGL80
TrEMBLR0FIL91e-118R0FIL9_9BRAS; Uncharacterized protein
STRINGXP_006289339.11e-118(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-29AGAMOUS-like 96