PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002761m
Common NameCARUB_v10002761mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 95aa    MW: 10800.3 Da    PI: 8.2247
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002761mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.72.6e-0723481540
                     HHHHHHHHHHHHHHHHHT-EEEEEEE CS
           SRF-TF 15 kRrngilKKAeELSvLCdaevaviif 40
                      R+  ++KK +EL +LCd ++++++ 
  Carubv10002761m 23 TRLSKLIKKTNELTILCDGRACLMVN 48
                     69999******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.077147IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-101087IPR002100Transcription factor, MADS-box
PfamPF003194.0E-61455IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MGRKRSLTLN WATQRARRAN IKTRLSKLIK KTNELTILCD GRACLMVNDR EDDQLVVWPS  60
TQEAQPLVEN LYSFTEHERD PKAADPESSI ETIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002761m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023637685.13e-40agamous-like MADS-box protein AGL86
TrEMBLR0GR023e-63R0GR02_9BRAS; Uncharacterized protein
STRINGXP_006286411.15e-64(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.17e-28AGAMOUS-like 96