PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002712m
Common NameCARUB_v10002712mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20573.3 Da    PI: 7.1922
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002712mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.81e-111563149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ie +  r vt+skR+ngi  K  ELSvL d+++a + +  + k y++
  Carubv10002712m 15 KKIEREDDRLVTLSKRKNGIYTKLCELSVLGDVNIAFLGYTGSRKPYTF 63
                     67999999****************************9999888888888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554559.94E-20777IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-13766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.371767IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-12929IPR002100Transcription factor, MADS-box
PfamPF003191.6E-121663IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-122944IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-124465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSSKKTKGRQ KIKIKKIERE DDRLVTLSKR KNGIYTKLCE LSVLGDVNIA FLGYTGSRKP  60
YTFGSPSLHD VVERFLNGEA STSSSSLQRP VDSANKAKIQ DLCKLYNNMM DGARAEEAKA  120
TEATASLEPL QEDAWWKVPL EEVKDQEEMK QLLERFEGLY EKLCYELAAR SERNDTAEND  180
K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002712m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289244.11e-132agamous-like MADS-box protein AGL62
TrEMBLR0FID91e-131R0FID9_9BRAS; Uncharacterized protein
STRINGXP_006289244.11e-131(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.11e-53AGAMOUS-like 64