PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002555m
Common NameCARUB_v10002555mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 194aa    MW: 21843.2 Da    PI: 8.4787
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002555mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.22.4e-091232042
                     HHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF 20 ilKKAeELSvLCdaevaviifss 42
                     +lKKA EL +LCd+ ++v++ s+
  Carubv10002555m  1 LLKKADELATLCDIPICVVVNSP 23
                     79******************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.92E-12168IPR002100Transcription factor, MADS-box
PfamPF003194.0E-7124IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
LLKKADELAT LCDIPICVVV NSPYDAAPEV WPSRETANKI VAQWSKMSVM DKTKKMVNQE  60
TYLQQRIAKA TESWGKARKE NKELEMKNIM FDCLSAKTSV PCIPKCDLRD FGSVIEQHLK  120
DVNRRREILK RNEVEGSSSS LVIAADVATT STVIPMLEMG SSSVGFHEKI RNQIENTLDV  180
KKTDKDLDLN KKW*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002555m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286819.11e-130agamous-like MADS-box protein AGL80
SwissprotQ9FJK34e-44AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLR0HAM71e-140R0HAM7_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006289132.11e-140(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.12e-84M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]